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QL F-test
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4
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2.1k
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Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
8.2 years ago • updated 7.5 years ago
elineverbon
▴ 20
3
votes
2
replies
6.6k
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QLF or LRT in edgeR for paired sample designs?
edger
paired samples
glm
QL F-test
LR-test
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
Akira Imamoto
• 0
2 results • Page
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Comment: Newbie Question - adding metadata to an analysis
by
James W. MacDonald
67k
You don't need to generate an `ExpressionSet`, as you already have a `GeneFeatureSet`, which extends `eSet` and is a better fit for what yo…
Comment: Newbie Question - adding metadata to an analysis
by
Bryan H
• 0
Thanks for the documentation. I have most of it working, except for the most critical step - incorporating the new metadata with the datase…
Comment: Diffbind interpretation of data - fold change
by
Vera
• 0
Thank you for confirming that the foldchange is log2
Comment: Diffbind interpretation of data - fold change
by
Vera
• 0
This solved it!
Comment: Diffbind interpretation of data - fold change
by
Vera
• 0
Perfect! Thank you so much!
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Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
Answer: Package `not available for Bioconductor version '3.20'` when it should be
Comment: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
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